Posts
2025:
- Modernizing Mumps Workflows: A roadmap balancing "consistency and reproducibility" with "continuous improvement and adaptability
- Coordinated Efforts: Nextstrain and Theiagen diagraming a potential coordinated effort to create a Nextclade dataset for Norovirus duel gene lineage classificaiton
- Modernizing pathogen workflows: Lessons from dengue and Lassa workflows and checking in with Subject Matter Experts (SMEs)
- Nextstrain gene trees: A case study with dengue
- Creating a Nextclade Dataset:Decision points with examples from PRRSV and Dengue
- Timeline of Workflow languages:Makefiles, Snakemake, Nextflow, and WDL
- Pathogen pipelines:transitioning from analyzing influenza to other datasets, dataset merging